About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18712443_18717124_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18712443 - 18717124
Intron Length:
4682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
GTTTGTCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGCTTTTCAGCT
Flanking Amino Acid:
TAADIAEWLKNPQAPQPQAP
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
66.8
38.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
79.4
0.66
0.8
73.9
36.8
Minor 5ss
32.8
-2
3.3
42.1
39
Minor BPS
49.5
0.04
1.8
68.21
43

Associated Gene:

Gene:
PDIA5
Ensembl Gene ID:
ENSAPLG00000005015
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005204
18676840 - 18765366
88527