Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1872227_1873504_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1872227 - 1873504

Intron Length:

1278

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAAAT

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGTTTTTAATG

Flanking Amino Acid:

WMPTLERVCEELNPDTTHPD

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

83.1

28.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.8

0.67

0.9

74.1

40.3

Minor 5ss

34.5

-1.8

3.1

48.5

47.2

Minor BPS

71.2

0.53

1.3

70.08

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041897

1862043 - 1883689

21647