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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18735333_18737809_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18735333 - 18737809
Intron Length:
2477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CATTCTCAGACT
Flanking Amino Acid:
TKKKIIDWLQNPEAPPPPEP
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
86.4
0.82
0.7
80.4
31.6
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
47.8
-0
2
68.3
42.9

Associated Gene:

Gene:
PDIA5
Ensembl Gene ID:
ENSAPLG00000005015
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005204
18676840 - 18765366
88527