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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1876797_1877559_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1876797 - 1877559
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
GLYFAPPEGDYQSYIEYTKT
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026608
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041897
1862043 - 1883689
21647