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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_187680_188299_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
187680 - 188299
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTACATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TCTTGCTGTACA
Flanking Amino Acid:
KKVTKKKDKMSNLVEEYFEA
Intron Amino Acid Position:
758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
67.6
0.44
1.2
75
40
Major PPT
69.5
0.44
0.9
66.6
39.5
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
49.2
-0
2.2
67.99
44.1

Associated Gene:

Gene:
FAM126B
Ensembl Gene ID:
ENSAPLG00000015610
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036696
122670 - 198917
76248
ENSAPLT00000016309
182547 - 198206
15660
ENSAPLT00000016176
122670 - 198917
76248