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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1877698_1878444_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1877698 - 1878444
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATTCTCAAAA
Flanking Amino Acid:
LLFDNILLTQSRASGSGAKS
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.4
30.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.9
0.67
0.8
78
30.8
Minor 5ss
34
-1.8
2.9
41.9
44.8
Minor BPS
56.7
0.21
1.6
65.51
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026608
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041897
1862043 - 1883689
21647