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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18783387_18785402_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18783387 - 18785402
Intron Length:
2016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTTCTCAATT
Flanking Amino Acid:
CTLKTGHYNINFISSLGVSY
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.3
0.68
0.9
73.7
34.5
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
76.7
0.92
1.4
91.82
31

Associated Gene:

Gene:
SEC22A
Ensembl Gene ID:
ENSAPLG00000005344
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005541
18781155 - 18793987
12833