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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18785567_18786650_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18785567 - 18786650
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAGATC
5'SS Class:
major
3'SS Sequence:
AAATTTTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
AVRPYCFIEFDNFIQRTKQR
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
72
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.9
0.4
1
62.1
42.6
Minor 5ss
36.3
-1.6
3.4
48.3
42.3
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
SEC22A
Ensembl Gene ID:
ENSAPLG00000005344
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005541
18781155 - 18793987
12833