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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1878676_1879649_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1878676 - 1879649
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
AAAATTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
CTTCCCAAAATT
Flanking Amino Acid:
SCVNIQKAIKGLVVMSAELE
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
64.4
0.32
1
60.4
44.7
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
51.3
0.12
2
74.18
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026608
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041897
1862043 - 1883689
21647