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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18786846_18789530_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18786846 - 18789530
Intron Length:
2685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATATCTTTATTT
Flanking Amino Acid:
EYKGTGKISAAPHQRLEPVT
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87
0.83
0.8
81.4
35.2
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
66
0.58
1.5
78.98
37.5

Associated Gene:

Gene:
SEC22A
Ensembl Gene ID:
ENSAPLG00000005344
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005541
18781155 - 18793987
12833