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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18789650_18792127_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18789650 - 18792127
Intron Length:
2478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
TTTATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
GFHAIESLLQSEGEDFSYVI
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.7
83.6
31.3
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
SEC22A
Ensembl Gene ID:
ENSAPLG00000005344
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005541
18781155 - 18793987
12833