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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18792194_18793786_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18792194 - 18793786
Intron Length:
1593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTTCCTGACA
Flanking Amino Acid:
FLGTAACLYQCYLFVYYTGW
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.7
33.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.6
0.76
0.9
80.7
31.5
Minor 5ss
36.3
-1.6
3.1
50.5
46
Minor BPS
69.4
0.61
1.6
82.95
30.8

Associated Gene:

Gene:
SEC22A
Ensembl Gene ID:
ENSAPLG00000005344
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005541
18781155 - 18793987
12833