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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1879803_1881719_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1879803 - 1881719
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCTAC
U12 Branch Point Sequence:
TCCCCCCTACTT
Flanking Amino Acid:
DFLSRLKFLQLWYENGMPPV
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
43.7
-0.4
1.2
35.7
31.8
Major PPT
88
0.86
0.7
83.5
24.7
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
47.8
-0
2
65.6
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026608
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041897
1862043 - 1883689
21647