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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18802548_18803395_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18802548 - 18803395
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TGGATCTGAGCA
Flanking Amino Acid:
HSFNNFQMKIGLNIGPVVAG
Intron Amino Acid Position:
1129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
81.2
0.7
0.7
73.6
31.4
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
47.7
-0.1
1.7
57.68
41.4

Associated Gene:

Gene:
ADCY5
Ensembl Gene ID:
ENSAPLG00000005419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005654
18800416 - 19010473
210058