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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18804181_18806043_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18804181 - 18806043
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTAAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CCTTCCTAAACT
Flanking Amino Acid:
ARLDFLWKLQATEEKEEMEE
Intron Amino Acid Position:
973

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.1
68.2
42.9
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
62.6
0.28
1
56.7
37.7
Minor 5ss
28.4
-2.5
2.9
32.7
42
Minor BPS
71.4
0.75
1.7
83.33
44.1

Associated Gene:

Gene:
ADCY5
Ensembl Gene ID:
ENSAPLG00000005419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005654
18800416 - 19010473
210058