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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18806990_18810768_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18806990 - 18810768
Intron Length:
3779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
NADLLVTANTYVSANATLPC
Intron Amino Acid Position:
919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.9
36
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
94.9
1.01
0.5
91.6
19.6
Minor 5ss
35.8
-1.6
3.2
46.7
36.7
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
ADCY5
Ensembl Gene ID:
ENSAPLG00000005419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005654
18800416 - 19010473
210058