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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18810945_18812906_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18810945 - 18812906
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
TGTCTTTATACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATAC
Flanking Amino Acid:
SPLPNCNFPEYFTYSVLLSL
Intron Amino Acid Position:
861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.5
0.71
0.9
76.6
36.7
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
61
0.32
1.7
71.26
40.2

Associated Gene:

Gene:
ADCY5
Ensembl Gene ID:
ENSAPLG00000005419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005654
18800416 - 19010473
210058