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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1881898_1882981_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1881898 - 1882981
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCAACTGATTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TTTTGCTTAATA
Flanking Amino Acid:
DKEYEIPPEDGVYIQGLFLD
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
59.2
0.21
1.1
54.4
44.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
77.5
0.86
1.7
87.11
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026608
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041897
1862043 - 1883689
21647