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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18820613_18825046_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
18820613 - 18825046
Intron Length:
4434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGCTTCAT
5'SS Class:
weak_major
3'SS Sequence:
TCCTTGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGTGCATTAAAA
Flanking Amino Acid:
VGHRTVVLKILSTFMLGFYL
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.01
1.1
51.3
41
Major BPS
75.8
0.64
1
65.8
41
Major PPT
83
0.74
0.8
80.2
31.8
Minor 5ss
32.4
-2
3.3
50.3
46
Minor BPS
58.2
0.25
1.8
70.99
40.5

Associated Gene:

Gene:
ADCY5
Ensembl Gene ID:
ENSAPLG00000005419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005654
18800416 - 19010473
210058