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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18825326_18829813_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18825326 - 18829813
Intron Length:
4488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCACATCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTCACAT
Flanking Amino Acid:
KRMGFEDPKDKNTQESMNPE
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.2
0.52
0.9
70
35.3
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
51.3
0.12
1.9
76.7
40.1

Associated Gene:

Gene:
ADCY5
Ensembl Gene ID:
ENSAPLG00000005419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005654
18800416 - 19010473
210058