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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1883086_1883482_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1883086 - 1883482
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTAACTGAAGT
Flanking Amino Acid:
PKILYDIVPVIWLKPCKRAD
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.1
0.79
0.8
80.6
31.4
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
54.2
0.21
2
79.07
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026608
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041897
1862043 - 1883689
21647