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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_188399_190005_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
188399 - 190005
Intron Length:
1607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAATG
Flanking Amino Acid:
QKLRKRRLNQQTLHDLLEKS
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
79.8
0.67
0.9
74.9
33.6
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
63.5
0.29
1.6
66.82
41.6

Associated Gene:

Gene:
FAM126B
Ensembl Gene ID:
ENSAPLG00000015610
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016176
122670 - 198917
76248
ENSAPLT00000036696
122670 - 198917
76248
ENSAPLT00000016309
182547 - 198206
15660