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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18854363_18858610_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18854363 - 18858610
Intron Length:
4248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TATTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTGTTCTTAACG
Flanking Amino Acid:
EMGMDMIEAISLVREVTGVN
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
90.8
0.92
0.7
89
27.5
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
73.6
0.6
1.4
70.44
43.2

Associated Gene:

Gene:
ADCY5
Ensembl Gene ID:
ENSAPLG00000005419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005654
18800416 - 19010473
210058