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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_18888515_19009462_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18888515 - 19009462
Intron Length:
120948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCGAC
5'SS Class:
major
3'SS Sequence:
CCTTTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
NAEDKFLLKQLVSNVLIFSC
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
39.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.6
0.78
0.8
79.6
32.3
Minor 5ss
35.2
-1.7
3.6
48.7
47.8
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
ADCY5
Ensembl Gene ID:
ENSAPLG00000005419
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005654
18800416 - 19010473
210058