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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1898001_1903643_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1898001 - 1903643
Intron Length:
5643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTTCTGTATCC
Flanking Amino Acid:
IQNKDKTGASAWFCGIISIT
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.2
0.79
0.7
80.5
25
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
50.4
-0
2.3
69.42
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013720
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035537
1885369 - 1922106
36738
ENSAPLT00000032785
1867236 - 1922106
54871
ENSAPLT00000014290
1886892 - 1943431
56540