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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_190116_192745_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
190116 - 192745
Intron Length:
2630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CACTTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATT
Flanking Amino Acid:
SLFSKWMLQLHLGFNIVLYG
Intron Amino Acid Position:
827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.4
0.6
0.8
69.7
30.7
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
77.3
0.94
1
89.84
27.4

Associated Gene:

Gene:
FAM126B
Ensembl Gene ID:
ENSAPLG00000015610
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036696
122670 - 198917
76248
ENSAPLT00000016309
182547 - 198206
15660
ENSAPLT00000016176
122670 - 198917
76248