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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19020303_19022509_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19020303 - 19022509
Intron Length:
2207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCTGACTTACTA
Flanking Amino Acid:
LILVMISYIPIFPQLYFHML
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
87.7
0.85
0.7
85.4
29.3
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
47
-0.2
1.9
55.21
44.5

Associated Gene:

Gene:
HACD2
Ensembl Gene ID:
ENSAPLG00000016518
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043284
19020220 - 19029396
9177