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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19056425_19061730_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19056425 - 19061730
Intron Length:
5306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
TCATTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATTCTTCACA
Flanking Amino Acid:
LIDFGLARRLESAGSLKVLF
Intron Amino Acid Position:
1587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.9
0.7
0.8
75.8
32.5
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
63.1
0.41
1.8
71.36
41.1

Associated Gene:

Gene:
MYLK
Ensembl Gene ID:
ENSAPLG00000005685
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006041
19043087 - 19186671
143585