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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_1905992_1943249_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1905992 - 1943249
Intron Length:
37258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GTGTTTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTACACCTAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
72.8
0.57
1
81
30.3
Major PPT
78.7
0.65
0.9
73.9
36.8
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
48.2
-0
2.1
72.62
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013720
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014290
1886892 - 1943431
56540