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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19061949_19067079_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19061949 - 19067079
Intron Length:
5131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGATACAGAAGC
Flanking Amino Acid:
EKANIVMVLEMVSGGELFER
Intron Amino Acid Position:
1514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
68
0.45
1
57.8
39
Major PPT
75.7
0.58
0.8
69
37
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
43.1
-0.5
2.1
55.55
41.6

Associated Gene:

Gene:
MYLK
Ensembl Gene ID:
ENSAPLG00000005685
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006041
19043087 - 19186671
143585