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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19068363_19071998_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19068363 - 19071998
Intron Length:
3636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTTCTATACA
Flanking Amino Acid:
ELVKVGEKQEEELKEEEAEL
Intron Amino Acid Position:
1402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.8
0.74
0.9
77.6
35.2
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
56.5
0.2
2
72.91
38.8

Associated Gene:

Gene:
MYLK
Ensembl Gene ID:
ENSAPLG00000005685
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006041
19043087 - 19186671
143585