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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19103904_19114322_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19103904 - 19114322
Intron Length:
10419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGATGTTCATTT
Flanking Amino Acid:
SSKSIVISQEGTLCSLTIEK
Intron Amino Acid Position:
1138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
70
0.45
0.9
70.3
35
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
43.9
-0.3
2.1
61.46
42.9

Associated Gene:

Gene:
MYLK
Ensembl Gene ID:
ENSAPLG00000005685
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006041
19043087 - 19186671
143585