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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19115228_19115587_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19115228 - 19115587
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTCGGATCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGGAT
U12 Branch Point Sequence:
TTTTTCGGATCA
Flanking Amino Acid:
SSASRAEMLRDGRESASSGE
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
66.4
0.41
1.4
65.3
43.7
Major PPT
68.2
0.41
0.9
61.8
38.7
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
48.2
-0.1
2.3
71.6
40.7

Associated Gene:

Gene:
MYLK
Ensembl Gene ID:
ENSAPLG00000005685
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006041
19043087 - 19186671
143585