About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19115669_19122921_R


Intron Information:

Intron Rank:
13

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
19115669 - 19122921

Intron Length:
7253

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATGTTTG

5'SS Class:
strong_major

3'SS Sequence:
TTAAACATTTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTGAT

U12 Branch Point Sequence:
TTTCACTTAAAC

Flanking Amino Acid:
RHAGQYEIQLRNQVGECSCQ

Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.6
0.91
0.8
80.5
35

Major BPS
91.3
1.03
0.7
79.6
35.6

Major PPT
72
0.5
1
67.4
43

Minor 5ss
49.9
-0
2.4
66.4
45.1

Minor BPS
68
0.54
1.6
78.85
35.4

Associated Gene:

Gene:
MYLK

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

19043087 - 19186671
143585