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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19123169_19124316_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19123169 - 19124316
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATGT
5'SS Class:
major
3'SS Sequence:
TTGTAAACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TGTTTGTAAACT
Flanking Amino Acid:
TQTQATLTVQEPQDGIQPWF
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
67.5
38.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
71.4
0.48
1
63.5
41.7
Minor 5ss
45.1
-0.5
3
65.2
46
Minor BPS
53.8
0.2
2.3
79.89
42.3

Associated Gene:

Gene:
MYLK
Ensembl Gene ID:
ENSAPLG00000005685
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006041
19043087 - 19186671
143585