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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19148787_19149746_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19148787 - 19149746
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
CCTGATGGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CTGTCCATAAAA
Flanking Amino Acid:
EGQEIKFKSKVSGKPKPNVE
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.4
39.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
60.6
0.24
1
57.4
43
Minor 5ss
27.9
-2.5
3.5
38
46.8
Minor BPS
59.5
0.29
1.8
69.64
42.3

Associated Gene:

Gene:
MYLK
Ensembl Gene ID:
ENSAPLG00000005685
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006041
19043087 - 19186671
143585