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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19150322_19151990_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19150322 - 19151990
Intron Length:
1669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATATCTGTAAAC
Flanking Amino Acid:
DKTDTYTQPLCTPSKPTTFA
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
80.7
34.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.4
0.77
0.7
81.8
29.8
Minor 5ss
45.2
-0.5
3.1
63.7
43
Minor BPS
52
0.04
2.1
66.84
38.5

Associated Gene:

Gene:
MYLK
Ensembl Gene ID:
ENSAPLG00000005685
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006041
19043087 - 19186671
143585