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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19152028_19153998_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19152028 - 19153998
Intron Length:
1971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
ATTATTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTCTTTTATT
Flanking Amino Acid:
ASVSAELTVQGPDKTDTYTQ
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.8
0.71
0.9
78.7
38.9
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
MYLK
Ensembl Gene ID:
ENSAPLG00000005685
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006041
19043087 - 19186671
143585