About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19277441_19278530_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19277441 - 19278530
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTACCT
5'SS Class:
weak_major
3'SS Sequence:
TCCTTTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTTTTTTGATC
Flanking Amino Acid:
LKNILQNEATVQISNKKLAP
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.19
1.3
54
43
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.1
0.75
0.7
76.9
31.9
Minor 5ss
29.6
-2.3
3.2
41.3
44.6
Minor BPS
63.6
0.41
1.1
67.45
31.8

Associated Gene:

Gene:
CCDC14
Ensembl Gene ID:
ENSAPLG00000006264
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006505
19271060 - 19278657
7598