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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19314071_19468678_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19314071 - 19468678
Intron Length:
154608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTGTCTTCATCT
Flanking Amino Acid:
DSEVDAFFRTGSFRNDGLKA
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.7
0.8
0.7
80.6
30.6
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
53.1
0.18
1.9
71.59
45.7

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256