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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19481503_19507286_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19481503 - 19507286
Intron Length:
25784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTATCTTGACA
Flanking Amino Acid:
KLVTYLASVPSEDVCKRGFT
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
86.7
0.83
0.7
81
31
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
71.5
0.67
1.2
77.13
32.8

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256