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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19550046_19554854_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19550046 - 19554854
Intron Length:
4809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCACCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTTCTTCACC
Flanking Amino Acid:
YEQVTQAYTEVSQDGKALLD
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
80.3
0.68
0.8
73.9
35.8
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
69.1
0.58
1.7
78.59
37

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256