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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19614182_19620128_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19614182 - 19620128
Intron Length:
5947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TCAGCTTTAACC
Flanking Amino Acid:
KEGEDLIQQLRDSAVSNNKT
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
70.3
0.46
0.9
64
36.8
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
68.9
0.57
1.4
70.6
41.2

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256