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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19638356_19644010_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19638356 - 19644010
Intron Length:
5655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CATCCTTTAAGC
Flanking Amino Acid:
LRHLQAEVKQVLGWIRNGES
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
88.7
0.87
0.7
83.8
24.3
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
58.6
0.25
1.7
64.62
41.1

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256