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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19644131_19646960_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19644131 - 19646960
Intron Length:
2830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
CACTTCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
ACTTCCTTACAG
Flanking Amino Acid:
EHEQFQLAIEKTHQSALQVQ
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.3
0.66
0.8
72.3
32.1
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
58.2
0.12
1.8
62.9
44.8

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256