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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19651630_19654139_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19651630 - 19654139
Intron Length:
2510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGCA
5'SS Class:
major
3'SS Sequence:
CTTTGCCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATCCTGCAGT
Flanking Amino Acid:
HTRGPEQQVKAILSELLQRE
Intron Amino Acid Position:
1083

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
67.1
38.4
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
80.4
0.68
0.8
73.1
32
Minor 5ss
27.9
-2.5
3.1
33.2
41.8
Minor BPS
48.5
-0
2.2
71.12
45.1

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256