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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19658020_19659173_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19658020 - 19659173
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTAA
5'SS Class:
major
3'SS Sequence:
TTACTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTTACATGAATT
Flanking Amino Acid:
LEKALGINTEDNKDLELDII
Intron Amino Acid Position:
1224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.2
33.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.6
0.76
0.8
77.3
36.7
Minor 5ss
38.5
-1.3
3
49.6
46.6
Minor BPS
55.2
0.24
1.8
75.05
41.5

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256