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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19659293_19660542_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19659293 - 19660542
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATGTCCC
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
AGCACATTAAAT
Flanking Amino Acid:
EEKRKSARKKEFIMAELLQT
Intron Amino Acid Position:
1263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.1
56.1
41.5
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
87.6
0.85
0.7
81.2
36.5
Minor 5ss
42.8
-0.8
2.7
50.8
39.6
Minor BPS
51.4
0.12
1.8
67.02
42.7

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256