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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19671841_19672250_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19671841 - 19672250
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TTCTCCACACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTATATGAAAT
Flanking Amino Acid:
TKYVYKNKLLTSELGVTEHV
Intron Amino Acid Position:
1508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
67.2
0.39
0.9
60.8
35.1
Minor 5ss
35
-1.7
3.5
45
44.5
Minor BPS
51
0.11
1.8
76.36
39.3

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256