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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_19673178_19674510_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19673178 - 19674510
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTCA
5'SS Class:
major
3'SS Sequence:
ATGTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTCCTCTTATGT
Flanking Amino Acid:
TPAKQRNNSRRDGVDDADSQ
Intron Amino Acid Position:
1589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.6
39.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82.8
0.74
0.9
77.3
36.3
Minor 5ss
49.7
-0
2.5
66
45
Minor BPS
52.1
0.14
1.9
72.48
44.6

Associated Gene:

Gene:
KALRN
Ensembl Gene ID:
ENSAPLG00000006373
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006708
19313998 - 19803253
489256